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i am having honda accord lx 2000 in honda i am having a vibration while i am leaving my accelerater and press clutch and brake to stop.

 
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if its when your braking it could be warped front brake discs...

 
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your best option is to take it into a honda dealer and have them run a diagnostic test on it witch will cost about 50 bucks depending on witch state your in and if they find the problem and you have them fix it they will waive the diagnostics fee but a vibration in a car is not something that can just be told how to fix because there are so many things that can cause it so i cant tell you that you need to clean the callipers because it might not be the problem the only way to know for sure is to have it checked out

 
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It is obvious, if you are having vibration only when clicking on the brakes then it is the brake rotors, this usually happen if you change the brake pads too late, if not then consult any dealer or you might have to change it every now and then